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Biochemical freeware
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Biochemical

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Added: September 22, 2013 | Visits: 277

Scaffold Hunter For Linux Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.



Platforms: *nix

License: Freeware Size: 12.59 MB Download (18): Scaffold Hunter For Linux Download

Added: September 22, 2010 | Visits: 631

ToBiX ToBiX is a Morphix-based Linux live CD containing a range of specialist applications for bioinformatics. With this distrubution you just boot from the CD and you have a fully functional LINUX OS distribution with open source applications. Besides using some RAM, ToBiX doesnt touch the host...





Platforms: *nix

License: Freeware Size: 457.2 MB Download (73): ToBiX Download

Released: October 23, 2012  |  Added: October 23, 2012 | Visits: 432

Scaffold Hunter Scaffold Hunter is an accessible Java-based application built for the analysis of structure-related biochemical data. The program is able to facilitate the interactive exploration of chemical space by enabling generation of and navigation in a scaffold tree hierarchy annotated with various...


Platforms: Windows, Windows Vista, 7

License: Freeware Download (53): Scaffold Hunter Download

Released: July 02, 2012  |  Added: July 02, 2012 | Visits: 187

rxncon rxncon is a specialized program that's been designed to generate contingency matrices. rxncon can also generate graphical representations of biochemical signaling networks. As its input it uses specially formatted Excel files. To start using rxncon you first have to upload a specially formated...


Platforms: Windows

License: Freeware Download (46): rxncon Download

Released: August 27, 2012  |  Added: August 27, 2012 | Visits: 266

StochPy StochPy (Stochastic modelling in Python) is an easy-to-use package, which provides several stochastic simulation algorithms (SSAs), which can be used to simulate biochemical systems in a stochastic manner. Further, several unique and easy-to-use analysis techniques are provided by StochPy....


Platforms: Windows

License: Freeware Download (27): StochPy Download

Released: November 16, 2012  |  Added: November 16, 2012 | Visits: 234

StochPy for Mac OS X StochPy (Stochastic modelling in Python) is an easy-to-use package, which provides several stochastic simulation algorithms (SSAs), which can be used to simulate biochemical systems in a stochastic manner. Further, several unique and easy-to-use analysis techniques are provided by StochPy....


Platforms: Mac

License: Freeware Download (27): StochPy for Mac OS X Download

Released: September 05, 2012  |  Added: September 05, 2012 | Visits: 295

StochPy for Linux StochPy (Stochastic modelling in Python) is an easy-to-use package, which provides several stochastic simulation algorithms (SSAs), which can be used to simulate biochemical systems in a stochastic manner. Further, several unique and easy-to-use analysis techniques are provided by StochPy....


Platforms: Linux

License: Freeware Download (27): StochPy for Linux Download

Released: December 12, 2012  |  Added: December 12, 2012 | Visits: 282

Gromacs for Mac OS X and Linux GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. It is primarily designed for biochemical molecules like proteins, lipids and nucleic acids that have a lot of complicated bonded...


Platforms: Mac, Linux

License: Freeware Size: 9.92 MB Download (128): Gromacs for Mac OS X and Linux Download

Released: August 02, 2012  |  Added: August 02, 2012 | Visits: 170

Allosteric Network Compiler A rule-based modelling framework for allosteric proteins and biochemical networks.


Platforms: Windows, Mac, Linux

License: Freeware Size: 484.51 KB Download (27): Allosteric Network Compiler Download

Released: November 03, 2012  |  Added: November 03, 2012 | Visits: 145

Bio::Metabolic A Perl Extension for modeling enzymatic (biochemical) reaction networks


Platforms: Windows, Mac, Linux

License: Freeware Size: 22.57 KB Download (27): Bio::Metabolic Download

Released: July 26, 2012  |  Added: July 26, 2012 | Visits: 159

Cellontro Cellontro models and simulates cells, other biological entities, and biochemical networks. Specify your models using XML and Java, or SBML. Cellontro is now completely contained within the Xholon sourceforge project.


Platforms: Windows, Mac, Linux

License: Freeware Size: 752.94 KB Download (27): Cellontro Download

Released: November 11, 2012  |  Added: November 11, 2012 | Visits: 221

facile A command-line biochemical network compiler for systems biology.


Platforms: Windows, Mac, Linux

License: Freeware Size: 4.31 MB Download (27): facile Download

Released: December 06, 2012  |  Added: April 29, 2014 | Visits: 359

MIRIAM Miriam (Minimal Information Requested In the Annotation of biochemical Models) is a standard and a set of tools created to help the processes of annotation and curation of computational models in biology.


Platforms: Windows, Mac, Linux

License: Freeware Size: 54.94 KB Download (37): MIRIAM Download

Released: September 02, 2012  |  Added: September 02, 2012 | Visits: 301

Synthetic Biology Software Suite Synthetic Biology Software Suite (SynBioSS) is composed of a wiki for biochemical kinetic constants, a graphical interface for simulating synthetic biological pathways, and a simulator that runs on either a desktop or supercomputer.


Platforms: Windows, Mac, BSD, Linux

License: Freeware Size: 24.84 MB Download (27): Synthetic Biology Software Suite Download

Released: June 13, 2014  |  Added: June 13, 2014 | Visits: 82

Chem3D View and manipulate stunning 3D chemical and biochemical images App overview: Chem3D for iPad enables scientists to view and manipulate stunning 3D images of chemical and biochemical structures. Re-imagined for the iPad, the Chem3D app features a facile user interface to manipulate images...


Platforms: iOS

License: Freeware Size: 25.9 MB Download (7): Chem3D Download

Released: July 08, 2010  |  Added: August 19, 2010 | Visits: 810

Life Ahead Computer Program The free Life Ahead Computer Program is believed to provide a most advanced-yet analysis of how diet and exercise can develop up to 15 more years of healthy days to an average US life. Many can enter a usual daily diet in a few minutes. Life Ahead then compiles the calories and 23 key...


Platforms: Windows

License: Freeware Size: 2.17 MB Download (111): Life Ahead Computer Program Download

Released: July 19, 2012  |  Added: July 19, 2012 | Visits: 287

PyBact PyBact is a Python written program designed for bacterial identification. The software generates simulated data matrix which accurately represents the probabilistic positive/negative results of the tested biochemical test


Platforms: Windows

License: Freeware Download (47): PyBact Download

Released: November 22, 2012  |  Added: November 22, 2012 | Visits: 171

ByoDyn ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.


Platforms: Mac, Linux

License: Freeware Size: 3.3 MB Download (28): ByoDyn Download

Released: November 11, 2012  |  Added: November 11, 2012 | Visits: 240

HalX HalX is a LIMS (Laboratory Information Management System). It is meant to be able to keep track of all the experimental details of any type of biochemical, molecular biology or structural biology experiment (but not all are available now...)


Platforms: Windows, Mac, Linux

License: Freeware Size: 1.78 MB Download (29): HalX Download

Released: December 21, 2012  |  Added: December 21, 2012 | Visits: 181

QDC QDC (quick direct-method controlled) is an optimized exact implementation of the Gillespie's direct-method. It is designed for biochemical simulations when there is the need of dynamic parameters whose values can change during the simulation.


Platforms: Windows, Mac, BSD, Linux

License: Freeware Size: 1.32 MB Download (28): QDC Download

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